Selected Publications
Hao Chi, Haifeng Chen, Kun He, Long Wu , Bing Yang, Rui-Xiang Sun, Jianyun Liu, Wen-Feng Zeng,
Chun-Qing Song, Si-Min He and Meng-Qiu Dong.
pNovo+: de novo peptide sequencing using complementary
HCD and ETD tandem mass spectra. Journal of Proteome Research, 12(2):615–625, 2012
Shan Lu, Sheng-Bo Fan, Bing Yang, Yu-Xin Li, Jia-Ming Meng, Long Wu , Pin Li, Kun Zhang, Mei-
Jun Zhang, Yan Fu, Jincai Luo, Rui-Xiang Sun, Si-Min He and Meng-Qiu Dong.
Mapping native disulfide bonds at a proteome scale. Nature Methods,
12(4):329, 2015
Long Wu , Sabine Amon, and Henry Lam.
A hybrid retention time alignment algorithm for SWATH-MS data. Proteomics, 16(15-16):2272–2283, 2016
Rui-Xiang Sun, Lan Luo, Long Wu , Rui-Min Wang, Wen-Feng Zeng, Hao Chi, Chao Liu, and Si-Min
He.
pTop 1.0: a high-accuracy and high-efficiency search engine for intact protein identification.
Analytical Chemistry, 88(6):3082–3090, 2016
Hao Chi, Chao Liu, Hao Yang, Wen-Feng Zeng, Long Wu , Wen-Jing Zhou, Rui-Min Wang, Xiu-Nan
Niu, Yue-He Ding, Yao Zhang, Zhao-Wei Wang, Zhen-Lin Chen, Rui-Xiang Sun, Tao Liu, Guang-Ming Tan, Meng-Qiu
Dong, Ping Xu, Pei-Heng Zhang and Si-Min He.
Comprehensive identification of peptides in tandem mass
spectra using an efficient open search engine. Nature Biotechnology, 36(11):1059–1061, 2018
Chun Fai Wong, Kar Lun Gallant Chan, Long Wu, Hei Ning Lam, Ping Yao, Tina T. X. Dong, Karl Wah Keung
Tsim.
A comprehensive proteomics study on edible bird's nest using new monoclonal antibody approach and
application in quality control.
Journal of Food Composition And Analysis, 66:145-151, 2018
Zhen-Lin Chen, Jia-Ming Meng, Yong Cao, Ji-Li Yin, Run-Qian Fang, Sheng-Bo Fan, Chao Liu, Wen-Feng Zeng,
Yue-He Ding, Dan Tan, Long Wu, Wen-Jing Zhou, Hao Chi, Rui-Xiang Sun, Meng-Qiu Dong and Si-Min He.
A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of
cross-linked peptides.
Nature Communications 10, 3404 (2019)
Jordy Evan Sulaiman, Lexin Long, Long Wu, Pei-Yuan Qian, Henry Lam.
Comparative proteomic investigation of multiple methicillin-resistant Staphylococcus aureus strains
generated through adaptive laboratory evolution, iScience, 24(9), 2021
Dominik Madej, Long Wu , and Henry Lam.
Common decoy distributions simplify false discovery rate estimation in shotgun proteomics. Journal of Proteome Research, 21(2):339–348, 2022
Long Wu, Ayman Hoque, Henry Lam.
Spectroscape enables real-time query and visualization of a spectral archive in proteomics. Nature Communications 14, 6267 (2023).
https://doi.org/10.1038/s41467-023-42006-x.
